05. 2D InterpolationΒΆ

In the mathematical field of numerical analysis, interpolation is the problem of constructing new data points within the range of a discrete set of known data points. In signal and image processing, the data may be recorded at irregular locations and it is often required to regularize the data into a regular grid.

In this tutorial, an example of 2d interpolation of an image is carried out using a combination of PyLops operators (pylops.Restriction and pylops.Laplacian) and the pylops.optimization module.

Mathematically speaking, if we want to interpolate a signal using the theory of inverse problems, we can define the following forward problem:

\[\mathbf{y} = \mathbf{R} \mathbf{x}\]

where the restriction operator \(\mathbf{R}\) selects \(M\) elements from the regularly sampled signal \(\mathbf{x}\) at random locations. The input and output signals are:

\[\mathbf{y}= [y_1, y_2,...,y_N]^T, \qquad \mathbf{x}= [x_1, x_2,...,x_M]^T, \qquad\]

with \(M>>N\).

import numpy as np
import matplotlib.pyplot as plt
import pylops

plt.close('all')
np.random.seed(0)

To start we import a 2d image and define our restriction operator to irregularly and randomly sample the image for 30% of the entire grid

im = np.load('../testdata/python.npy')[:, :, 0]

Nz, Nx = im.shape
N = Nz * Nx

# Subsample signal
perc_subsampling = 0.2

Nsub2d = int(np.round(N*perc_subsampling))
iava = np.sort(np.random.permutation(np.arange(N))[:Nsub2d])

# Create operators and data
Rop = pylops.Restriction(N, iava, dtype='float64')
D2op = pylops.Laplacian((Nz, Nx), weights=(1, 1), dtype='float64')

x = im.flatten()
y = Rop * x
y1 = Rop.mask(x)

We will now use two different routines from our optimization toolbox to estimate our original image in the regular grid.

xcg_reg_lop = \
    pylops.optimization.leastsquares.NormalEquationsInversion(Rop, [D2op], y,
                                                              epsRs=[np.sqrt(0.1)],
                                                              returninfo=False,
                                                              **dict(maxiter=200))

# Invert for interpolated signal, lsqrt
xlsqr_reg_lop, istop, itn, r1norm, r2norm = \
    pylops.optimization.leastsquares.RegularizedInversion(Rop, [D2op], y,
                                                          epsRs=[np.sqrt(0.1)],
                                                          returninfo=True,
                                                          **dict(damp=0,
                                                                 iter_lim=200,
                                                                 show=0))

# Reshape estimated images
im_sampled = y1.reshape((Nz, Nx))
im_rec_lap_cg = xcg_reg_lop.reshape((Nz, Nx))
im_rec_lap_lsqr = xlsqr_reg_lop.reshape((Nz, Nx))

Finally we visualize the original image, the reconstructed images and their error

fig, axs = plt.subplots(1, 4, figsize=(12, 4))
fig.suptitle('Data reconstruction - normal eqs', fontsize=14,
             fontweight='bold', y=0.95)
axs[0].imshow(im, cmap='viridis', vmin=0, vmax=250)
axs[0].axis('tight')
axs[0].set_title('Original')
axs[1].imshow(im_sampled, cmap='viridis', vmin=0, vmax=250)
axs[1].axis('tight')
axs[1].set_title('Sampled')
axs[2].imshow(im_rec_lap_cg, cmap='viridis', vmin=0, vmax=250)
axs[2].axis('tight')
axs[2].set_title('2D Regularization')
axs[3].imshow(im - im_rec_lap_cg, cmap='gray', vmin=-80, vmax=80)
axs[3].axis('tight')
axs[3].set_title('2D Regularization Error')
plt.tight_layout()
plt.subplots_adjust(top=0.8)

fig, axs = plt.subplots(1, 4, figsize=(12, 4))
fig.suptitle('Data reconstruction - regularized eqs', fontsize=14,
             fontweight='bold', y=0.95)
axs[0].imshow(im, cmap='viridis', vmin=0, vmax=250)
axs[0].axis('tight')
axs[0].set_title('Original')
axs[1].imshow(im_sampled, cmap='viridis', vmin=0, vmax=250)
axs[1].axis('tight')
axs[1].set_title('Sampled')
axs[2].imshow(im_rec_lap_lsqr, cmap='viridis', vmin=0, vmax=250)
axs[2].axis('tight')
axs[2].set_title('2D Regularization')
axs[3].imshow(im - im_rec_lap_lsqr, cmap='gray', vmin=-80, vmax=80)
axs[3].axis('tight')
axs[3].set_title('2D Regularization Error')
plt.tight_layout()
plt.subplots_adjust(top=0.8)
  • ../_images/sphx_glr_interpolation_001.png
  • ../_images/sphx_glr_interpolation_002.png

Total running time of the script: ( 0 minutes 16.467 seconds)

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